species:   Scscl
pid:       PID1622
parent:    Ssc-milR-98
paralog:   
locus:     NW_001820823.1:276184-276278
matures:   ['UCUAGAUCACGUGGAAGUGCA', 'UGCUCUCAUGUGACUCCAUAUG']
srr:       SRR12527895
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram NW_001820823.1:276184-276278

1 out of bounds
7 alignments
4 proper strand
3 stranded perfect matches

          ************************                            ***********************          
AAUAUCACGGUGUGCUCUCAUGUGACUCCAUAUGAGCCUCUCGAUCAUGUUACGAGGGUAGCCGUCUAGAUCACGUGGAAGUGCACUAGGCUCUC
........((((((((.((((((((.((...(((.((((((((.........))))))..)))))...)))))))))).))))))))........
----------------------------------------------------------------UCUAGAUCACGUGGAAGUGCA---------- l=21 a=3 c
------------UGCUCUCAUGUGACUCCAUAUG------------------------------------------------------------- l=22 a=0 c*
----------------------------------------------------------------UCUAGAUCACGUGGAAGUGCA---------- l=21 a=3 ma
------------UGCUCUCAUGUGACUCCAUAUG------------------------------------------------------------- l=22 a=0 ma*

----------------------------------------------------------------UCUAGAUCACGUGGAAGUGCA---------- l=21 a=3 (c,ma)
------------------------------------------------------------------UAGAUCACGUGGAAGUGCAa--------- l=20 a=1 

mb-01011
ax-1011011
ku-01
ss-111110111100
fn-101
